Details
-
Bug
-
Status: Resolved
-
Major
-
Resolution: Incomplete
-
2.1.0
-
None
Description
Hi, we have long running services that use dynamic allocation on Mesos(1.1.0)
Services running periodic spark batch jobs with open spark context.
However, there are sporadic failures caused by below error.
Seems like one executor disconnects 
from some external shuffle service and this fails everything. There is no possibility to recover/reregister executor after this. Usually restarting service helps(i.e. external shuffle services are up and running on all executors)
Might be connected to https://issues.apache.org/jira/browse/SPARK-9439 but for Mesos integration
Any ideas will be welcome.
org.apache.spark.SparkException: Job aborted due to stage failure: ShuffleMapStage 3820 () has failed the maximum allowable number of times: 4. Most recent failure reason: org.apache.spark.shuffle.FetchFailedException: Failure while fetching StreamChunkId{streamId=537714277840, chunkIndex=0}: java.lang.RuntimeException: Executor is not registered (appId=d265bc5e-cb4a-4f3e-88a2-aa79ca3a05fc-0067, execId=2943) at org.apache.spark.network.shuffle.ExternalShuffleBlockResolver.getBloc kData(ExternalShuffleBlockResolver.java:171) at org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:105) at org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:95 at org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89) at org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125) at org.apache.spark.network.server.TransportRequ estHandler.handle(TransportRequestHandler.java:103) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:3 57) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.timeout.IdleStateHan dler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343 at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invoke ChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336 ) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContex t.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1 294) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.DefaultChannelPipeli ne.fireChannelRead(DefaultChannelPipeline.java:911) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643) at io.netty.channel.nio.NioEvent Loop.processSelectedKeysOptimized(NioEventLoop.java:566) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442) at io.netty.util.concurrent.SingleThreadEventExe cutor$2.run(SingleThreadEventExecutor.java:131) at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144) at java.lang.Thread.run(Thread.java:748) at org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:442) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:418) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:59) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408) at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32) at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithKeys$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source) at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:395) at org.apache.spark.sql.execution.columnar.InMemoryRelation$$anonfun$1$$anon$1.hasNext(InMemoryRelation.scala:133) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:215) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1038) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1029) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:969) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1029) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:760) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:334) at org.apache.spark.rdd.RDD.iterator(RDD.scala:285) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) at org.apache.spark.scheduler.Task.run(Task.scala:108) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748) Caused by: org.apache.spark.network.client.ChunkFetchFailureException: Failure while fetching StreamChunkId{streamId=537714277840, chunkIndex=0}: java.lang.RuntimeException: Executor is not registered (appId=d265bc5e-cb4a-4f3e-88a2-aa79ca3a05fc-0067, execId=2943) at org.apache.spark.network.shuffle.ExternalShuffleBlockResolver.getBlockData(ExternalShuffleBlockResolver.java:171) at org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:105) at org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:95) at org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89) at org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:103) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131) at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144) at java.lang.Thread.run(Thread.java:748) at org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:182) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:120) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131) at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144) ... 1 more