FileNotFoundException on _temporary while doing saveAsTable to S3

When submitting spark jobs to yarn cluster, I occasionally see these error messages while doing saveAsTable. I have tried doing this with spark.speculation=false, and get the same error. These errors are similar to SPARK-2984, but my jobs are writing to S3(s3n) :

Caused by: java.io.FileNotFoundException: File s3n://xxxxxxx/_temporary/0/task_201606080516_0004_m_000079 does not exist.
at org.apache.hadoop.fs.s3native.NativeS3FileSystem.listStatus(NativeS3FileSystem.java:506)
at org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.mergePaths(FileOutputCommitter.java:360)
at org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.commitJob(FileOutputCommitter.java:310)
at org.apache.parquet.hadoop.ParquetOutputCommitter.commitJob(ParquetOutputCommitter.java:46)
at org.apache.spark.sql.execution.datasources.BaseWriterContainer.commitJob(WriterContainer.scala:230)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelation.scala:151)
... 42 more