[BEAM-10084] XML IO java tests failing [Java 11] - ASF JIRA

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Type: Sub-task
Status: Resolved
Priority: P2
Resolution: Fixed
Affects Version/s: None
Fix Version/s: 2.24.0
Component/s: io-java-xml
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Description

Gradle task :sdks:java:io:xml:test fails during Java 11 Precommit job

Example stack trace:

> Task :sdks:java:io:xml:test

org.apache.beam.sdk.io.xml.XmlIOTest > testWriteThenReadLarger STANDARD_ERROR
    May 26, 2020 7:29:37 AM org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn processElement
    INFO: Opening writer 4c054a13-7ff7-4b54-9398-f6bd6e531aff for window org.apache.beam.sdk.transforms.windowing.GlobalWindow@5967d09d pane PaneInfo{isFirst=true, isLast=true, timing=ON_TIME, index=0, onTimeIndex=0} destination null
    May 26, 2020 7:29:37 AM org.apache.beam.sdk.io.FileBasedSink$Writer open
    SEVERE: Beginning write to  failed, closing channel.
    java.io.IOException: javax.xml.bind.JAXBException
     - with linked exception:
    [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
    	at org.apache.beam.sdk.io.xml.XmlIO$Sink.open(XmlIO.java:664)
    	at org.apache.beam.sdk.io.FileIO$Write$ViaFileBasedSink$1$1.prepareWrite(FileIO.java:1390)
    	at org.apache.beam.sdk.io.FileBasedSink$Writer.open(FileBasedSink.java:952)
    	at org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn.processElement(WriteFiles.java:769)
    	at org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn$DoFnInvoker.invokeProcessElement(Unknown Source)
    	at org.apache.beam.repackaged.direct_java.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:227)
    	at org.apache.beam.repackaged.direct_java.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:183)
    	at org.apache.beam.repackaged.direct_java.runners.core.SimplePushbackSideInputDoFnRunner.processElementInReadyWindows(SimplePushbackSideInputDoFnRunner.java:78)
    	at org.apache.beam.runners.direct.ParDoEvaluator.processElement(ParDoEvaluator.java:240)
    	at org.apache.beam.runners.direct.DoFnLifecycleManagerRemovingTransformEvaluator.processElement(DoFnLifecycleManagerRemovingTransformEvaluator.java:54)
    	at org.apache.beam.runners.direct.DirectTransformExecutor.processElements(DirectTransformExecutor.java:160)
    	at org.apache.beam.runners.direct.DirectTransformExecutor.run(DirectTransformExecutor.java:124)
    	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
    	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    	at java.base/java.lang.Thread.run(Thread.java:834)
    Caused by: javax.xml.bind.JAXBException
     - with linked exception:
    [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
    	at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
    	at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
    	at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
    	at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
    	at org.apache.beam.sdk.io.xml.XmlIO$Sink.open(XmlIO.java:659)
    	... 16 more
    Caused by: java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
    	at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
    	at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
    	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
    	at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
    	at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
    	... 20 more


org.apache.beam.sdk.io.xml.XmlIOTest > testWriteThenReadLarger FAILED
    org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.io.IOException: javax.xml.bind.JAXBException
     - with linked exception:
    [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
        at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:348)
        at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:318)
        at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:213)
        at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:67)
        at org.apache.beam.sdk.Pipeline.run(Pipeline.java:317)
        at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:350)
        at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:331)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenReadLarger(XmlIOTest.java:159)

        Caused by:
        java.io.IOException: javax.xml.bind.JAXBException
         - with linked exception:
        [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]

            Caused by:
            javax.xml.bind.JAXBException
             - with linked exception:
            [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]

                Caused by:
                java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory

org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaSinkAndReadFilesUTF8 FAILED
    java.lang.RuntimeException: Error when creating marshaller from JAXB Context.
        at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:65)
        at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:58)
        at java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
        at java.lang.ThreadLocal.get(ThreadLocal.java:172)
        at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:108)
        at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:94)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:114)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.util.CoderUtils.encodeToSafeStream(CoderUtils.java:82)
        at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:66)
        at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:51)
        at org.apache.beam.sdk.testing.PAssert$CheckRelationAgainstExpected.<init>(PAssert.java:1136)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.satisfies(PAssert.java:639)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:600)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:516)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:110)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaSinkAndReadFilesUTF8(XmlIOTest.java:69)

        Caused by:
        javax.xml.bind.JAXBException
         - with linked exception:
        [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
            at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
            at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
            at org.apache.beam.sdk.io.xml.JAXBCoder.getContext(JAXBCoder.java:141)
            at org.apache.beam.sdk.io.xml.JAXBCoder.access$000(JAXBCoder.java:44)
            at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:62)
            ... 17 more

            Caused by:
            java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
                at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
                at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
                at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
                at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
                at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
                ... 23 more

org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaWriteAndReadISO8859 FAILED
    java.lang.RuntimeException: Error binding classes to a JAXB Context.
        at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:530)
        at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:463)
        at org.apache.beam.sdk.Pipeline.applyInternal(Pipeline.java:542)
        at org.apache.beam.sdk.Pipeline.applyTransform(Pipeline.java:476)
        at org.apache.beam.sdk.values.PCollection.apply(PCollection.java:355)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:118)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaWriteAndReadISO8859(XmlIOTest.java:84)

        Caused by:
        javax.xml.bind.JAXBException
         - with linked exception:
        [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
            at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
            at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
            at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:528)
            ... 6 more

            Caused by:
            java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
                at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
                at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
                at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
                at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
                at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
                ... 10 more

org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaSinkAndReadFilesISO8859 FAILED
    java.lang.RuntimeException: Error when creating marshaller from JAXB Context.
        at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:65)
        at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:58)
        at java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
        at java.lang.ThreadLocal.get(ThreadLocal.java:172)
        at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:108)
        at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:94)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:114)
        at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
        at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
        at org.apache.beam.sdk.util.CoderUtils.encodeToSafeStream(CoderUtils.java:82)
        at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:66)
        at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:51)
        at org.apache.beam.sdk.testing.PAssert$CheckRelationAgainstExpected.<init>(PAssert.java:1136)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.satisfies(PAssert.java:639)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:600)
        at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:516)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:110)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaSinkAndReadFilesISO8859(XmlIOTest.java:74)

        Caused by:
        javax.xml.bind.JAXBException
         - with linked exception:
        [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
            at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
            at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
            at org.apache.beam.sdk.io.xml.JAXBCoder.getContext(JAXBCoder.java:141)
            at org.apache.beam.sdk.io.xml.JAXBCoder.access$000(JAXBCoder.java:44)
            at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:62)
            ... 17 more

            Caused by:
            java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
                at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
                at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
                at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
                at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
                at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
                ... 23 more

org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaWriteAndReadUTF8 FAILED
    java.lang.RuntimeException: Error binding classes to a JAXB Context.
        at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:530)
        at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:463)
        at org.apache.beam.sdk.Pipeline.applyInternal(Pipeline.java:542)
        at org.apache.beam.sdk.Pipeline.applyTransform(Pipeline.java:476)
        at org.apache.beam.sdk.values.PCollection.apply(PCollection.java:355)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:118)
        at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaWriteAndReadUTF8(XmlIOTest.java:79)

        Caused by:
        javax.xml.bind.JAXBException
         - with linked exception:
        [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
            at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
            at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
            at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
            at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:528)
            ... 6 more

            Caused by:
            java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
                at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
                at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
                at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
                at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
                at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
                ... 10 more

org.apache.beam.sdk.io.xml.XmlSourceTest > testReadXMLWithMultiByteElementName SKIPPED

Gradle Test Executor 146 started executing tests.

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https://github.com/apache/beam/pull/12268

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Assignee:: Tyson Hamilton

Reporter:: Pawel Pasterz

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 26/May/20 09:57

Updated:: 24/Jul/20 19:54

Resolved:: 19/Jul/20 13:53

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XML IO java tests failing [Java 11]

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